Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g03430.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g03430
Gene model
LOC_Os05g03430.1
Description
ATSIZ1/SIZ1, putative, expressed
Family
PHD
3D structure (top 5)
2RNO 1V66 2RNN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496189 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.974
AT5G60410.3 Score: 0.907

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Carica papaya

evm.TU.supercontig_139.75 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Chlamydomonas reinhardtii

330078 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.997

Coccomyxa sp. C-169

83729 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.997

Physcomitrella patens

165698 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.996

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Sorghum bicolor

4893760 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.988

Selaginella moellendorffii

93518 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.996

Vitis vinifera

GSVIVP00024500001 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Zea mays

GRMZM2G155123_P02 Score: 1
GRMZM2G155123_P03 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.988

Expression data

Expressed Sequence Tags

At.43746
Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572
Hv.17786
HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248
Hv.27008
HU09G06r HU Hordeum vulgare subsp. vulgare cDNA clone HU09G06 5-PRIME, mRNA sequence /clone=HU09G06 /clone_end=5' /gb=CA007920
Hv.28331
HDP24H10w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP24H10, mRNA sequence /clone=HDP24H10 /gb=EX595569
Hv.29323
HVSMEa0013B05f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0013B05f, mRNA sequence /clone=HVSMEa0013B05f /gb=BF625633
Mtr.12920
EST510425 HOGA Medicago truncatula cDNA clone pHOGA-23L12 5' end, mRNA sequence /clone=pHOGA-23L12 /clone_end=5' /gb=BG648806
Os.4647
Oryza sativa Japonica Group cDNA clone:001-116-F09, full insert sequence /cds=p(251,2878) /gb=AK105290
Sbi.11224
LG1_285_D12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564180
Sbi.4697
FE1_1_H03.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_1_H03_A002 5', mRNA sequence /clone=FE1_1_H03_A002 /clone_end=5' /gb=CF070684 /gi=33107343

Domain Architecture

SAP PF02037 LOC_Os05g03430.1
DomainStartEndBit scoreE-value
SAP124647.55.4e-11
PHD11717044.15.6e-10
zf-MIZ36141078.62.3e-20

Sequences