Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g03760.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g03760
Gene model
LOC_Os05g03760.1
Description
zinc finger family protein, putative, expressed
Family
C3H
3D structure (top 5)
1OY3 2FO1 1IKN 1AWC 3B7B
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

752023 Score: 1

Vitis vinifera

GSVIVP00024088001 Score: 1

Zea mays

GRMZM2G054844_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.11201
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf94p23, mRNA sequence /gb=AK250836
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Os.11774
Oryza sativa Japonica Group cDNA clone:001-202-E04, full insert sequence /cds=p(173,1978) /gb=AK105767
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Sbi.10984
DG1_68_C09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE360970
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477

Domain Architecture

Ank PF00023 LOC_Os05g03760.1
DomainStartEndBit scoreE-value
Ank10614127.17.4e-05
zf-CCCH25327930.19e-06

Sequences