Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g08970.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g08970
Gene model
LOC_Os05g08970.1
Description
SSRP1-like FACT complex subunit, putative, expressed
Family
HMG
3D structure (top 5)
3F5R 2GCL 1AAB 2CO9 1GT0
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Coccomyxa sp. C-169

38618 Score: 1

Micromonas sp. RCC299

63692 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g08970.1 Score: 1
LOC_Os05g08970.1 Score: 1

Sorghum bicolor

4851462 Score: 1

Zea mays

GRMZM2G079250_P01 Score: 1
GRMZM2G089107_P02 Score: 1

Expression data

Expressed Sequence Tags

At.21931
Arabidopsis thaliana ATHMG (HIGH MOBILITY GROUP); transcription factor (ATHMG) mRNA, complete cds /cds=p(66,2006) /gb=NM_113794
Hv.23004
HVSMEg0006H07f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0006H07f, mRNA sequence /clone=HVSMEg0006H07f /gb=BG343583
Os.54219
Oryza sativa Japonica Group cDNA clone:J033098G02, full insert sequence /gb=AK102592
Os.7840
Oryza sativa Japonica Group cDNA clone:J013075A09, full insert sequence /cds=p(206,2131) /gb=AK066832
Sbi.3622
HS1_65_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_65_G09_A012 5', mRNA sequence /clone=HS1_65_G09_A012 /clone_end=5' /gb=CD207493 /gi=30939605
Vvi.11694
VV_PEa04d10.b2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV228763

Domain Architecture

SSrecog PF03531 LOC_Os05g08970.1
DomainStartEndBit scoreE-value
SSrecog218435519.44.7e-153
Rtt106358502211.13e-60
HMG_box55862680.84.9e-21

Sequences