Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g23670.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g23670
Gene model
LOC_Os05g23670.1
Description
transcription factor jumonji, putative, expressed
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Cyanidioschyzon merolae

CMT461C Score: 1

Micromonas pusilla CCMP1545

19881 Score: 1

Micromonas sp. RCC299

56462 Score: 1

Ostreococcus tauri

34223 Score: 1

Physcomitrella patens

136290 Score: 1

Sorghum bicolor

4991161 Score: 1

Vitis vinifera

GSVIVP00035196001 Score: 1

Zea mays

GRMZM2G044301_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.15767
RUS68B10w HF Hordeum vulgare subsp. vulgare cDNA clone HF14D11, mRNA sequence /clone=HF14D11 /gb=FD523224
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Hv.27190
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf42k21, mRNA sequence /gb=AK249502
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 LOC_Os05g23670.1
DomainStartEndBit scoreE-value
JmjN7711079.21.5e-20
JmjC3184342305.8e-66
zf-C5HC2539592845.3e-22
FYRN76982176.97.4e-20
FYRC82491998.81.8e-26

Sequences