Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g41172.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g41172
Gene model
LOC_Os05g41172.2
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
Family
SET
3D structure (top 5)
1MVH 3FDE 2W5Y 3H6L 3BO5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_33.185 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41172.1 Score: 1
LOC_Os05g41172.2 Score: 1

Sorghum bicolor

5060718 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41172.1 Score: 1
LOC_Os05g41172.2 Score: 1

Zea mays

GRMZM2G140577_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41172.1 Score: 1
LOC_Os05g41172.2 Score: 1

Expression data

Expressed Sequence Tags

Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Hv.29295
AL506577 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY03J09T 5', mRNA sequence /clone=HY03J09 /clone_end=5' /gb=AL506577
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.35901
Oryza sativa Japonica Group cDNA clone:J013002H03, full insert sequence /gb=AK065227
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 LOC_Os05g41172.2
DomainStartEndBit scoreE-value
YDG_SRA212367320.43.8e-93
Pre-SET394494135.12.2e-37
SET496652172.51.2e-48

Sequences