Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os05g43520.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g43520
Gene model
LOC_Os05g43520.1
Description
BSD, putative, expressed
Family
BSD
3D structure (top 5)
1X3A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.16772
HVSMEh0101A04f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0101A04f, mRNA sequence /clone=HVSMEh0101A04f /gb=BE602656
Hv.30467
HVSMEb0009K01f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0009K01f, mRNA sequence /clone=HVSMEb0009K01f /gb=BF629029
Hv.4460
HV_CEa0006F11f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0006F11f, mRNA sequence /clone=HV_CEa0006F11f /gb=BF263283
Os.12255
Oryza sativa Japonica Group cDNA clone:J033132M15, full insert sequence /cds=p(94,1287) /gb=AK103570
Os.34745
Oryza sativa Japonica Group cDNA clone:J023049A10, full insert sequence /gb=AK070308

Domain Architecture

BSD PF03909 LOC_Os05g43520.1
DomainStartEndBit scoreE-value
BSD19625659.31.5e-14

Sequences