Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g01934.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g01934
Gene model
LOC_Os06g01934.1
Description
homeobox domain containing protein, expressed
Family
HB
3D structure (top 5)
2DMN 1PUF 1DU6 1B72 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493837 Score: 1

Arabidopsis thaliana

AT5G41410.1 Score: 1

Sorghum bicolor

4769352 Score: 1

Zea mays

GRMZM2G013617_P01 Score: 1
GRMZM2G161961_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
Hv.10278
BJ462078 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vulgare subsp. vulgare cDNA clone baak21m18 3', mRNA sequence /clone=baak21m18 /clone_end=3' /gb=BJ462078
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Os.11805
Oryza sativa (japonica cultivar-group) Os11g0158600 (Os11g0158600) mRNA, complete cds /cds=p(1,1278) /gb=NM_001072340
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.9332
Oryza sativa Japonica Group cDNA clone:J013000A19, full insert sequence /gb=AK111490
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 LOC_Os06g01934.1
DomainStartEndBit scoreE-value
POX105236187.63.5e-53
Homeobox2963543.30.0057

Sequences