Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g04850.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g04850
Gene model
LOC_Os06g04850.1
Description
homeobox associated leucine zipper, putative, expressed
Family
HB
3D structure (top 5)
1NK2 2E1O 2CUE 1JGG 2DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

255930 Score: 1
802149 Score: 0.972

Selaginella moellendorffii

139631 Score: 1

Zea mays

GRMZM2G106276_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.44957
20-L022147-065-007-D03-SeLA MPIZ-ADIS-065f Arabidopsis thaliana cDNA clone 007-D03, mRNA sequence /clone=007-D03 /gb=DR751659
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.2365
Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds /cds=p(193,1119) /gb=AY206864
Os.37618
CT842783 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG10272, mRNA sequence /clone=CONTIG10272 /gb=CT842783
Os.4605
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence /gb=CT832945
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 LOC_Os06g04850.1
DomainStartEndBit scoreE-value
Homeobox9414871.23.7e-18
HALZ14919362.31.9e-15

Sequences