Gene model: LOC_Os06g07350.1

Species: Oryza sativa subsp. japonica Locus LOC_Os06g07350 Gene model LOC_Os06g07350.1 Description RNA-binding motif protein, putative, expressed Family C3H 3D structure (top 5) 2CQH 2YTC 1X4G 2DGU 3CW1

PDB entry: 2CQH 2YTC 1X4G 2DGU 3CW1 1U6F 1P27 2DGO 1WF1 2CPJ 2DIS 1X4F 2CQ3 1X5U 2ERR 3EX7 2CQI 2YWK 2CPD 1X4A 2DNP 1RK8 2DGS 2F3J 1X4H 1WEX 1H2V 1X4B 2CQB 2DNQ 2AD9 2DGT 2F9D 1WHW 2CPZ 2E5H 1SJQ 1WHX 2CQ0 2DNH 2JVO 1OO0 1X5P 2CPH 2CQD 2CQ1 1P1T 2E5J 2HVZ 2CQG 2DO0 2BZ2 2FY1 1WI8 2DNM 2JWN 1X5T 2DO4 2DGX 2DGP 2I2Y 1NO8 2E44 2DH8 2CQ4 2A3J 1NU4 2E5G 2CPE 2DNG 2JRS 1X5O 1WEY 2CPF 2DHG 1X4C 2CQC 2ADC 1FHT 2D9P 3BS9 1X4D 2DNZ 1SJR 2AYM 2DGV 1WHY 1X5S 1WF0 2CPI 1FJC 2CQ2 3D2W 1L3K 2G4B 1WWH 1QM9 1WG1 2CPX 2GHP 2DIV 2J76 3B4D 1S79 1CVJ 3BEG 2QFJ 2FC8 2E5I 2FC9 1FJ7 2DNL 2WBR 1UAW 2CJK 1FJE 2DNN 1FXL 1B7F 1WG5 2CPY 2CQP 2D9O 2HGM 1HD0 2DHS 1IQT 2JVR 1X4E 2DGW 2HZC 2MSS 1WEZ 2HGN 2VOO 2DB1 2DHX 1JMT 2EK1 2DIT 1WEL 2NLW 2HGL 2DHA 2PE8 2DNY 1O0P

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470757 Score: 1

Arabidopsis thaliana

AT1G07360.1 Score: 1

Chlorella sp. NC64A

33881 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g07350.1 Score: 1
LOC_Os07g18050.1 Score: 0.93

Chlamydomonas reinhardtii

417182 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g07350.1 Score: 1
LOC_Os07g18050.1 Score: 0.934

Coccomyxa sp. C-169

29405 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g07350.1 Score: 1
LOC_Os07g18050.1 Score: 0.933

Physcomitrella patens

185655 Score: 1

Selaginella moellendorffii

154896 Score: 1

Vitis vinifera

GSVIVP00024168001 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.12692)
• NCBI EST Profile Viewer (UniGene: At.25418)
• NCBI EST Profile Viewer (UniGene: At.54760)
• NCBI EST Profile Viewer (UniGene: Hv.2670)
• NCBI EST Profile Viewer (UniGene: Os.17507)
• NCBI EST Profile Viewer (UniGene: Os.5565)
• NCBI EST Profile Viewer (UniGene: Pba.5485)
• NCBI EST Profile Viewer (UniGene: Ppa.5833)
• NCBI EST Profile Viewer (UniGene: Pth.5485)
• NCBI EST Profile Viewer (UniGene: Sbi.1193)
• NCBI EST Profile Viewer (UniGene: Vvi.1512)
• NCBI EST Profile Viewer (UniGene: Vvi.19286)

At.12692

Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds /cds=p(89,1540) /gb=AF428354

At.25418

Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT1G07360) mRNA, complete cds /cds=p(71,1516) /gb=NM_100610

At.54760

Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G07060) mRNA, complete cds /cds=p(1,1092) /gb=NM_120788

Hv.2670

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf68d17, mRNA sequence /gb=AK250256

Os.17507

Oryza sativa Japonica Group cDNA clone:J013067M02, full insert sequence /cds=p(67,1515) /gb=AK120360

Os.5565

Oryza sativa Japonica Group cDNA clone:J023003O14, full insert sequence /gb=AK111689

Pba.5485

WS02550.C21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_J17 3', mRNA sequence /clone=WS02550_J17 /clone_end=3' /gb=DT492399

Ppa.5833

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_185655) mRNA, complete cds /cds=p(227,1651) /gb=XM_001766453

Pth.5485

WS0233.B21_N13 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_N13 3', mRNA sequence /clone=WS0233_N13 /clone_end=3' /gb=CV239911

Sbi.1193

CCC1_74_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_74_H12_A007 5', mRNA sequence /clone=CCC1_74_H12_A007 /clone_end=5' /gb=CD221244 /gi=30964678

Vvi.1512

WIN013.BR_L15 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN013_L15 5', mRNA sequence /clone=WIN013_L15 /clone_end=5' /gb=EC920260

Vvi.19286

C1G03878 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G03878, mRNA sequence /clone=C1G03878 /gb=EE062734

protein sequence
transcript sequence