Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g13670.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g13670
Gene model
LOC_Os06g13670.1
Description
E2F family transcription factor protein, putative, expressed
Family
E2F-DP
3D structure (top 5)
1CF7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4897135 Score: 1

Zea mays

GRMZM2G024688_P01 Score: 1
GRMZM2G060000_P01 Score: 1
GRMZM2G024688_P02 Score: 0.979
GRMZM2G060000_P02 Score: 0.979

Expression data

Expressed Sequence Tags

Hv.28959
HDP12L12w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12L12, mRNA sequence /clone=HDP12L12 /gb=EX590291
Os.47376
Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence /gb=AK111537
Os.50197
Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence /gb=AK120032
Os.83480
CI066289 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa (japonica cultivar-group) cDNA clone 015-M022R-E04 3', mRNA sequence /clone=015-M022R-E04 /clone_end=3' /gb=CI066289
Sbi.8440
RHOH1_46_B03.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_46_B03_A002 5', mRNA sequence /clone=RHOH1_46_B03_A002 /clone_end=5' /gb=CN131200 /gi=45960401

Domain Architecture

E2F_TDP PF02319 LOC_Os06g13670.1
DomainStartEndBit scoreE-value
E2F_TDP57122107.64.3e-29
E2F_TDP2032831244.9e-34

Sequences