Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g14440.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g14440
Gene model
LOC_Os06g14440.2
Description
DRD1, putative, expressed
Family
SNF2
3D structure (top 5)
1Z63 1WP9 2FWR 1Z3I 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481010 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1
LOC_Os07g25390.1 Score: 0.929

Physcomitrella patens

113504 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1
LOC_Os07g25390.1 Score: 0.943

Populus trichocarpa

195587 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1
LOC_Os07g25390.1 Score: 0.921

Sorghum bicolor

4839144 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1

Vitis vinifera

GSVIVP00023895001 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1
LOC_Os07g25390.1 Score: 1

Zea mays

GRMZM2G064574_P01 Score: 1
GRMZM2G064574_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1

Expression data

Expressed Sequence Tags

At.39568
Arabidopsis thaliana CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase (CHR34) mRNA, complete cds /cds=p(1,2451) /gb=NM_127717
At.40283
Arabidopsis thaliana DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding (DRD1) mRNA, complete cds /cds=p(1,2667) /gb=NM_127193
Hv.16949
HVSMEk0003J12f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEk0003J12f, mRNA sequence /clone=HVSMEk0003J12f /gb=BG414750
Mtr.13984
NF032E03FL1F1023 Developing flower Medicago truncatula cDNA clone NF032E03FL 5', mRNA sequence /clone=NF032E03FL /clone_end=5' /gb=BQ147082
Os.15946
Oryza sativa Japonica Group cDNA clone:J013132J03, full insert sequence /gb=AK072159
Os.61122
Oryza sativa (japonica cultivar-group) Os07g0434500 (Os07g0434500) mRNA, complete cds /cds=p(1,3672) /gb=NM_001066032
Os.80581
Oryza sativa (japonica cultivar-group) Os08g0289400 (Os08g0289400) mRNA, complete cds /cds=p(1,1836) /gb=NM_001067994
Os.86342
Oryza sativa (japonica cultivar-group) Os08g0289300 (Os08g0289300) mRNA, complete cds /cds=p(1,1299) /gb=NM_001067993
Vvi.11805
S2B20419 Buds (VvS2) Vitis vinifera cDNA clone S2B20419, mRNA sequence /clone=S2B20419 /gb=EE077407

Domain Architecture

SNF2_N PF00176 LOC_Os06g14440.2
DomainStartEndBit scoreE-value
SNF2_N4087703.86e-09
Helicase_C79287059.71.1e-14

Sequences