Gene model: LOC_Os06g21390.1

Species: Oryza sativa subsp. japonica Locus LOC_Os06g21390 Gene model LOC_Os06g21390.1 Description Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed Family C3H 3D structure (top 5) 2D9N 2RHK 2E5S 2CQE 2RPP
	PDB entry: 2D9N 2RHK 2E5S 2CQE 2RPP 3D2N 3D2Q 1M9O 1Z6U 1JM7 2ECW 1V87 2YU4 2CKL 3FL2 1RMD 2YSL 2ECY 1E4U 1G25 2EA6 2CSY 3HCT 2CT2 2D8T 2EGP 2ECJ 2ECV 2F42 2YSJ

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

907942 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.924

Arabidopsis thaliana

AT3G08505.1 Score: 1
AT3G08505.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.931

Chlorella sp. NC64A

18295 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.952

Chlamydomonas reinhardtii

105687 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.95

Micromonas pusilla CCMP1545

13206 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.958

Ostreococcus lucimarinus

86816 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.4 Score: 1
LOC_Os06g21390.3 Score: 0.997

Ostreococcus tauri

31899 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.958

Physcomitrella patens

139138 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.935

Populus trichocarpa

706432 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.921

Sorghum bicolor

4770553 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1

Selaginella moellendorffii

110501 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.941

Zea mays

GRMZM2G028609_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.906

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.28383)
• NCBI EST Profile Viewer (UniGene: At.71511)
• NCBI EST Profile Viewer (UniGene: Hv.5250)
• NCBI EST Profile Viewer (UniGene: Os.26343)
• NCBI EST Profile Viewer (UniGene: Pba.8620)
• NCBI EST Profile Viewer (UniGene: Ppa.21711)
• NCBI EST Profile Viewer (UniGene: Pth.17392)
• NCBI EST Profile Viewer (UniGene: Pth.8620)
• NCBI EST Profile Viewer (UniGene: Vvi.12304)

At.28383

Arabidopsis thaliana zinc finger (CCCH-type/C3HC4-type RING finger) family protein (AT3G08505) mRNA, complete cds /cds=p(87,1058) /gb=NM_202526

At.71511

AYBGF12TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG499496

Hv.5250

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence /gb=AK248188

Os.26343

Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence /cds=p(224,1330) /gb=AK120250

Pba.8620

WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048

Ppa.21711

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_139138) mRNA, partial cds /cds=p(1,975) /gb=XM_001772688

Pth.17392

Populus trichocarpa clone PX0011_J15 unknown mRNA /cds=p(416,745) /gb=EF144239

Pth.8620

WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048

Vvi.12304

C2B01083 Buds/little clusters (VvC2) Vitis vinifera cDNA clone C2B01083, mRNA sequence /clone=C2B01083 /gb=EE063910

protein sequence
transcript sequence