Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g21390.3

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g21390
Gene model
LOC_Os06g21390.3
Description
Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
Family
C3H
3D structure (top 5)
2D9N 1M9O 2CQE 2E5S 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

907942 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.924

Arabidopsis thaliana

AT3G08505.1 Score: 1
AT3G08505.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.931

Chlorella sp. NC64A

18295 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.952

Chlamydomonas reinhardtii

105687 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.95

Micromonas pusilla CCMP1545

13206 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.958

Ostreococcus lucimarinus

86816 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.4 Score: 1
LOC_Os06g21390.3 Score: 0.997

Ostreococcus tauri

31899 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.958

Physcomitrella patens

139138 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.935

Populus trichocarpa

706432 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.921

Selaginella moellendorffii

110501 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.941

Zea mays

GRMZM2G028609_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.906

Expression data

Expressed Sequence Tags

At.28383
Arabidopsis thaliana zinc finger (CCCH-type/C3HC4-type RING finger) family protein (AT3G08505) mRNA, complete cds /cds=p(87,1058) /gb=NM_202526
At.71511
AYBGF12TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG499496
Hv.5250
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence /gb=AK248188
Os.26343
Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence /cds=p(224,1330) /gb=AK120250
Pba.8620
WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048
Ppa.21711
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_139138) mRNA, partial cds /cds=p(1,975) /gb=XM_001772688
Pth.17392
Populus trichocarpa clone PX0011_J15 unknown mRNA /cds=p(416,745) /gb=EF144239
Pth.8620
WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048
Vvi.12304
C2B01083 Buds/little clusters (VvC2) Vitis vinifera cDNA clone C2B01083, mRNA sequence /clone=C2B01083 /gb=EE063910

Domain Architecture

zf-CCCH PF00642 LOC_Os06g21390.3
DomainStartEndBit scoreE-value
zf-CCCH2045314.8e-06
zf-CCCH13716224.50.00045
zf-C3HC420526231.33.9e-06
zf-CCCH29332011.60.044

Sequences