Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: LOC_Os06g24070.1

Identification

Species: Oryza sativa subsp. japonica Locus LOC_Os06g24070 Gene model LOC_Os06g24070.1 Description myb-like DNA-binding domain containing protein, expressed Family G2-like 3D structure (top 5) 1IRZ
	PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Arabidopsis lyrata

480887 Score: 1

Arabidopsis thaliana

AT2G20570.1 Score: 1

Physcomitrella patens

178653 Score: 1
61021 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g13740.1 Score: 1
LOC_Os06g24070.1 Score: 1

Populus trichocarpa

654401 Score: 1

Sorghum bicolor

5061562 Score: 1

Vitis vinifera

GSVIVP00018643001 Score: 1

Zea mays

GRMZM2G022333_P02 Score: 1
GRMZM2G026833_P02 Score: 1
GRMZM2G022333_P01 Score: 0.989
GRMZM2G026833_P01 Score: 0.989

Expression data

Expressed Sequence Tags

Os.3340: Oryza sativa putative transcription factor OsGLK1 (Glk1) mRNA, complete cds /cds=p(215,1582) /gb=AF318581
Sbi.8118: WOUND1_82_C03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_82_C03_A002 5', mRNA sequence /clone=WOUND1_82_C03_A002 /clone_end=5' /gb=CN152516 /gi=45996581

Domain Architecture

LOC_Os06g24070.1

Domain	Start	End	Bit score	E-value
Myb_DNA-binding	182	232	41.5	3.2e-09
G2-like	185	232	128.2	3.7e-38

Sequences

protein sequence
transcript sequence