Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g29020.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g29020
Gene model
LOC_Os06g29020.1
Description
retrotransposon protein, putative, unclassified, expressed
Family
HB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Populus trichocarpa

728097 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Sorghum bicolor

5051037 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Zea mays

GRMZM2G111204_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g29020.1 Score: 1
LOC_Os06g29020.2 Score: 1

Expression data

Expressed Sequence Tags

At.5471
Arabidopsis thaliana sequence-specific DNA binding / transcription factor (AT3G18380) mRNA, complete cds /cds=p(138,1187) /gb=NM_202604
Hv.2315
BES1824104i21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010I214 5-PRIME, mRNA sequence /clone=MPMGp2010I21104 /clone_end=5' /gb=CK123587
Hv.23697
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178n11, mRNA sequence /gb=AK252943
Mtr.10215
NF044E01PL1F1005 Phosphate starved leaf Medicago truncatula cDNA clone NF044E01PL 5', mRNA sequence /clone=NF044E01PL /clone_end=5' /gb=BF638145
Os.18095
Oryza sativa Japonica Group cDNA clone:J013151L16, full insert sequence /cds=p(2176,2880) /gb=AK068560
Os.48090
Oryza sativa Japonica Group cDNA clone:J013073N05, full insert sequence /cds=p(1372,1713) /gb=AK099692
Os.89492
CR282215 Oryza sativa library (Han B) Oryza sativa cDNA clone p769b03p3, mRNA sequence /clone=p769b03p3 /gb=CR282215
Sbi.17997
ABA1_41_G05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_41_G05_A012 3', mRNA sequence /clone=ABA1_41_G05_A012 /clone_end=3' /gb=CB929280 /gi=30165551
Vvi.12650
WIN0211.TB24_K10 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0211_K10 3', mRNA sequence /clone=WIN0211_K10 /clone_end=3' /gb=EC926246

Domain Architecture

Homeobox PF00046 LOC_Os06g29020.1
DomainStartEndBit scoreE-value
Homeobox107613.30.0006

Sequences