Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: LOC_Os06g46400.1

Identification

Species: Oryza sativa subsp. japonica Locus LOC_Os06g46400 Gene model LOC_Os06g46400.1 Description ATCPSF30/CPSF30, putative, expressed Family C3H 3D structure (top 5) 2YU6 2YUD 2E5S 2RHK 2RPP
	PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Arabidopsis lyrata

890588 Score: 1

Arabidopsis thaliana

AT1G30460.1 Score: 1

Populus trichocarpa

234849 Score: 1

Sorghum bicolor

5032111 Score: 1

Vitis vinifera

GSVIVP00028411001 Score: 1

Expression data

Expressed Sequence Tags

At.40546: Arabidopsis thaliana ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (ATCPSF30/CPSF30) mRNA, complete cds /cds=p(80,1975) /gb=NM_102782
Os.68827: Oryza sativa (japonica cultivar-group) Os06g0677700 (Os06g0677700) mRNA, complete cds /cds=p(1,1998) /gb=NM_001064894

Domain Architecture

LOC_Os06g46400.1

Domain	Start	End	Bit score	E-value
zf-CCCH	59	84	20.4	0.003
zf-CCCH	87	112	12.5	0.034
zf-CCCH	113	138	24.2	0.00053
YTH	304	398	145.1	2.1e-40

Sequences

protein sequence
transcript sequence