Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g46400.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g46400
Gene model
LOC_Os06g46400.1
Description
ATCPSF30/CPSF30, putative, expressed
Family
C3H
3D structure (top 5)
2YU6 2YUD 2E5S 2RHK 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

890588 Score: 1

Arabidopsis thaliana

AT1G30460.1 Score: 1

Populus trichocarpa

234849 Score: 1

Sorghum bicolor

5032111 Score: 1

Vitis vinifera

GSVIVP00028411001 Score: 1

Expression data

Expressed Sequence Tags

At.40546
Arabidopsis thaliana ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (ATCPSF30/CPSF30) mRNA, complete cds /cds=p(80,1975) /gb=NM_102782
Os.68827
Oryza sativa (japonica cultivar-group) Os06g0677700 (Os06g0677700) mRNA, complete cds /cds=p(1,1998) /gb=NM_001064894

Domain Architecture

zf-CCCH PF00642 LOC_Os06g46400.1
DomainStartEndBit scoreE-value
zf-CCCH598420.40.003
zf-CCCH8711212.50.034
zf-CCCH11313824.20.00053
YTH304398145.12.1e-40

Sequences