Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os06g51220.4

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g51220
Gene model
LOC_Os06g51220.4
Description
HMG1/2, putative, expressed
Family
HMG
3D structure (top 5)
2CRJ 1GT0 2CS1 3F27 1HME
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4898798 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g51220.2 Score: 1
LOC_Os06g51220.3 Score: 1
LOC_Os06g51220.4 Score: 1

Expression data

Expressed Sequence Tags

At.21298
Arabidopsis thaliana HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor (HMGB2) mRNA, complete cds /cds=p(187,621) /gb=NM_101920
At.27031
Arabidopsis thaliana HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor (HMGB3) mRNA, complete cds /cds=p(183,608) /gb=NM_101921
Mtr.4125
EST644064 GESD Medicago truncatula cDNA clone GESD-29G17, mRNA sequence /clone=GESD-29G17 /gb=CA990556
Os.12832
CT849368 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG4779, mRNA sequence /clone=CONTIG4779 /gb=CT849368
Pba.906
WS02523.BR_M09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_M09 5', mRNA sequence /clone=WS02523_M09 /clone_end=5' /gb=DT478777
Pth.906
Populus trichocarpa clone WS0116_C16 unknown mRNA /cds=p(138,572) /gb=EF146195
Sbi.17824
OX1_39_E03.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_39_E03_A002 5', mRNA sequence /clone=OX1_39_E03_A002 /clone_end=5' /gb=CN135912 /gi=45968416
Vvi.24274
VVI007B09_583876 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI007B09 5, mRNA sequence /clone=VVI007B09 /clone_end=5' /gb=DT017018
Vvi.7970
VV_PEb17h09.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence /gb=EV235052
Vvi.8094
VV_PEd07c10.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242681
Vvi.8136
VV_PEa13e11.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV230679

Domain Architecture

HMG_box PF00505 LOC_Os06g51220.4
DomainStartEndBit scoreE-value
HMG_box42111117.54.4e-32

Sequences