Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os07g25450.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os07g25450
Gene model
LOC_Os07g25450.1
Description
histone-lysine N-methyltransferase, putative, expressed
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

902401 Score: 1

Arabidopsis thaliana

AT2G33290.1 Score: 1

Populus trichocarpa

229952 Score: 1

Sorghum bicolor

4789504 Score: 1

Vitis vinifera

GSVIVP00020373001 Score: 1

Zea mays

GRMZM2G025924_P01 Score: 1
GRMZM2G112145_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12115
Arabidopsis thaliana SUVH2 (SU(VAR)3-9 HOMOLOG 2) (SUVH2) mRNA, complete cds /cds=p(115,2070) /gb=NM_128889
At.3118
Arabidopsis thaliana SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding (SUVH9) mRNA, complete cds /cds=p(400,2352) /gb=NM_001036548
Hv.18209
AV920392 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags13m07 3', mRNA sequence /clone=bags13m07 /clone_end=3' /gb=AV920392
Os.26478
Oryza sativa Japonica Group cDNA clone:J013097K17, full insert sequence /cds=p(299,2353) /gb=AK067172
Os.52522
Oryza sativa Japonica Group cDNA clone:J013110N01, full insert sequence /gb=AK067640

Domain Architecture

YDG_SRA PF02182 LOC_Os07g25450.1
DomainStartEndBit scoreE-value
YDG_SRA236392326.84.3e-95
Pre-SET422522106.49.6e-29
SET524679115.71.5e-31

Sequences