version: 3.0
Gene model: LOC_Os07g37790.1
Identification
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Genome Databases
Orthologs and co-orthologs (in-paralogs)
Look for sequence homologs using SIMAP@MIPS
SIMAPOrtholog identification by INPARANOID
Arabidopsis lyrata
479606 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Arabidopsis thaliana
AT3G20800.1 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Chlorella sp. NC64A
140433 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Chlamydomonas reinhardtii
137355 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Coccomyxa sp. C-169
40878 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Micromonas pusilla CCMP1545
49542 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Micromonas sp. RCC299
60639 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Physcomitrella patens
203554 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Populus trichocarpa
805875 Score: 1829875 Score: 0.955
Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Sorghum bicolor
5057851 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Selaginella moellendorffii
174818 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Vitis vinifera
GSVIVP00027280001 Score: 1Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Zea mays
GRMZM2G045331_P01 Score: 1GRMZM2G045331_P05 Score: 1
GRMZM2G045331_P06 Score: 1
GRMZM2G140552_P01 Score: 1
GRMZM2G140552_P04 Score: 1
Oryza sativa subsp. japonica
LOC_Os04g52340.1 Score: 1LOC_Os07g37790.1 Score: 1
Expression data
- MPSS data
- NCBI EST Profile Viewer (UniGene: At.19618)
- NCBI EST Profile Viewer (UniGene: At.48685)
- NCBI EST Profile Viewer (UniGene: Cre.2378)
- NCBI EST Profile Viewer (UniGene: Hv.13912)
- NCBI EST Profile Viewer (UniGene: Hv.24291)
- NCBI EST Profile Viewer (UniGene: Mtr.12183)
- NCBI EST Profile Viewer (UniGene: Os.31773)
- NCBI EST Profile Viewer (UniGene: Os.33061)
- NCBI EST Profile Viewer (UniGene: Os.76830)
- NCBI EST Profile Viewer (UniGene: Os.83430)
- NCBI EST Profile Viewer (UniGene: Os.83683)
- NCBI EST Profile Viewer (UniGene: Ppa.3625)
- NCBI EST Profile Viewer (UniGene: Ppa.6891)
- NCBI EST Profile Viewer (UniGene: Sbi.11721)
- NCBI EST Profile Viewer (UniGene: Sbi.5693)
- NCBI EST Profile Viewer (UniGene: Vca.9646)
- NCBI EST Profile Viewer (UniGene: Vvi.4960)
Expressed Sequence Tags
- At.19618
- Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830756
- At.48685
- Arabidopsis thaliana putative cell differentiation protein (At3g20800) mRNA, complete cds /cds=p(48,998) /gb=AY091082
- Cre.2378
- Chlamydomonas reinhardtii Rcd1-like protein (RCD1) mRNA, complete cds /cds=p(291,1190) /gb=XM_001694007
- Hv.13912
- AL508730 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY09K03V 5', mRNA sequence /clone=HY09K03 /clone_end=5' /gb=AL508730
- Hv.24291
- Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165j19, mRNA sequence /gb=AK252610
- Mtr.12183
- MEUBB21TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE347784
- Os.31773
- Oryza sativa Japonica Group cDNA clone:002-115-H08, full insert sequence /gb=AK106782
- Os.33061
- Oryza sativa Japonica Group cDNA clone:J033071K05, full insert sequence /gb=AK101921
- Os.76830
- Oryza sativa Japonica Group cDNA, clone: J075183G10, full insert sequence /gb=AK242259
- Os.83430
- EI109C24 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI109C24 5', mRNA sequence /clone=EI109C24 /clone_end=5' /gb=CX117377
- Os.83683
- CI137036 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativa (japonica cultivar-group) cDNA clone 027-M041R-E05 3', mRNA sequence /clone=027-M041R-E05 /clone_end=3' /gb=CI137036
- Ppa.3625
- Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_224039) mRNA, complete cds /cds=p(1,870) /gb=XM_001780269
- Ppa.6891
- Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203554) mRNA, complete cds /cds=p(249,1127) /gb=XM_001754879
- Sbi.11721
- DG1_126_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356585
- Sbi.5693
- GABR1_2_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_2_A05_A002 3', mRNA sequence /clone=GABR1_2_A05_A002 /clone_end=3' /gb=CX612352 /gi=57811072
- Vca.9646
- CBOX15769.rev CBOX Volvox carteri f. nagariensis induced female Eve, 2kb Volvox carteri f. nagariensis cDNA clone CBOX15769 3', mRNA sequence /clone=CBOX15769 /clone_end=3' /gb=FD910124
- Vvi.4960
- VV_PEa20e11.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV231375