Gene model: LOC_Os07g37790.1

Species: Oryza sativa subsp. japonica Locus LOC_Os07g37790 Gene model LOC_Os07g37790.1 Description expressed protein Family Rcd1-like 3D structure (top 5) 2FV2
	PDB entry: 2FV2

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479606 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Arabidopsis thaliana

AT3G20800.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Chlorella sp. NC64A

140433 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Chlamydomonas reinhardtii

137355 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Coccomyxa sp. C-169

40878 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Micromonas pusilla CCMP1545

49542 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Micromonas sp. RCC299

60639 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Physcomitrella patens

203554 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Populus trichocarpa

805875 Score: 1
829875 Score: 0.955

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Sorghum bicolor

5057851 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Selaginella moellendorffii

174818 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Vitis vinifera

GSVIVP00027280001 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

Zea mays

GRMZM2G045331_P01 Score: 1
GRMZM2G045331_P05 Score: 1
GRMZM2G045331_P06 Score: 1
GRMZM2G140552_P01 Score: 1
GRMZM2G140552_P04 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g52340.1 Score: 1
LOC_Os07g37790.1 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.19618)
• NCBI EST Profile Viewer (UniGene: At.48685)
• NCBI EST Profile Viewer (UniGene: Cre.2378)
• NCBI EST Profile Viewer (UniGene: Hv.13912)
• NCBI EST Profile Viewer (UniGene: Hv.24291)
• NCBI EST Profile Viewer (UniGene: Mtr.12183)
• NCBI EST Profile Viewer (UniGene: Os.31773)
• NCBI EST Profile Viewer (UniGene: Os.33061)
• NCBI EST Profile Viewer (UniGene: Os.76830)
• NCBI EST Profile Viewer (UniGene: Os.83430)
• NCBI EST Profile Viewer (UniGene: Os.83683)
• NCBI EST Profile Viewer (UniGene: Ppa.3625)
• NCBI EST Profile Viewer (UniGene: Ppa.6891)
• NCBI EST Profile Viewer (UniGene: Sbi.11721)
• NCBI EST Profile Viewer (UniGene: Sbi.5693)
• NCBI EST Profile Viewer (UniGene: Vca.9646)
• NCBI EST Profile Viewer (UniGene: Vvi.4960)

At.19618

Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830756

At.48685

Arabidopsis thaliana putative cell differentiation protein (At3g20800) mRNA, complete cds /cds=p(48,998) /gb=AY091082

Cre.2378

Chlamydomonas reinhardtii Rcd1-like protein (RCD1) mRNA, complete cds /cds=p(291,1190) /gb=XM_001694007

Hv.13912

AL508730 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY09K03V 5', mRNA sequence /clone=HY09K03 /clone_end=5' /gb=AL508730

Hv.24291

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165j19, mRNA sequence /gb=AK252610

Mtr.12183

MEUBB21TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE347784

Os.31773

Oryza sativa Japonica Group cDNA clone:002-115-H08, full insert sequence /gb=AK106782

Os.33061

Oryza sativa Japonica Group cDNA clone:J033071K05, full insert sequence /gb=AK101921

Os.76830

Oryza sativa Japonica Group cDNA, clone: J075183G10, full insert sequence /gb=AK242259

Os.83430

EI109C24 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI109C24 5', mRNA sequence /clone=EI109C24 /clone_end=5' /gb=CX117377

Os.83683

CI137036 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativa (japonica cultivar-group) cDNA clone 027-M041R-E05 3', mRNA sequence /clone=027-M041R-E05 /clone_end=3' /gb=CI137036

Ppa.3625

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_224039) mRNA, complete cds /cds=p(1,870) /gb=XM_001780269

Ppa.6891

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203554) mRNA, complete cds /cds=p(249,1127) /gb=XM_001754879

Sbi.11721

DG1_126_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356585

Sbi.5693

GABR1_2_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_2_A05_A002 3', mRNA sequence /clone=GABR1_2_A05_A002 /clone_end=3' /gb=CX612352 /gi=57811072

Vca.9646

CBOX15769.rev CBOX Volvox carteri f. nagariensis induced female Eve, 2kb Volvox carteri f. nagariensis cDNA clone CBOX15769 3', mRNA sequence /clone=CBOX15769 /clone_end=3' /gb=FD910124

Vvi.4960

VV_PEa20e11.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV231375

protein sequence
transcript sequence