Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os07g39800.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os07g39800
Gene model
LOC_Os07g39800.1
Description
transcription repressor HOTR, putative, expressed
Family
HRT

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

918835 Score: 1

Arabidopsis thaliana

AT5G56780.1 Score: 1

Carica papaya

evm.TU.supercontig_7.232 Score: 1

Physcomitrella patens

168816 Score: 1

Populus trichocarpa

762663 Score: 1

Sorghum bicolor

5034582 Score: 1

Vitis vinifera

GSVIVP00016588001 Score: 1

Zea mays

GRMZM2G108352_P02 Score: 1
GRMZM2G160856_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.13772
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence /gb=AK252040
Os.38056
Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence /gb=AK102792

Domain Architecture

HRT HRT LOC_Os07g39800.1
DomainStartEndBit scoreE-value
HRT31134065.43e-19
HRT43045922.85.5e-07
HRT53956723.84e-07
HRT58561464.27.1e-19

Sequences

protein sequence
transcript sequence