Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os08g03310.6

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os08g03310
Gene model
LOC_Os08g03310.6
Description
zinc finger family protein, putative, expressed
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2JVO 2CPF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480130 Score: 1
485672 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.919
LOC_Os08g03310.4 Score: 0.919
LOC_Os08g03310.5 Score: 0.911

Carica papaya

evm.TU.supercontig_211.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.916
LOC_Os08g03310.4 Score: 0.916
LOC_Os08g03310.5 Score: 0.907

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.938
LOC_Os08g03310.4 Score: 0.938
LOC_Os08g03310.5 Score: 0.932

Physcomitrella patens

137259 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.918
LOC_Os08g03310.4 Score: 0.918
LOC_Os08g03310.5 Score: 0.91

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.92
LOC_Os08g03310.4 Score: 0.92
LOC_Os08g03310.5 Score: 0.913

Vitis vinifera

GSVIVP00027197001 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.1 Score: 0.926
LOC_Os08g03310.2 Score: 0.926
LOC_Os08g03310.3 Score: 0.912
LOC_Os08g03310.4 Score: 0.912
LOC_Os08g03310.5 Score: 0.904

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
Os.23145
Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence /gb=AK111902
Ppa.22636
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_137259) mRNA, complete cds /cds=p(1,1161) /gb=XM_001771223
Ppa.22867
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_119974) mRNA, complete cds /cds=p(1,1266) /gb=XM_001758199
Sbi.5520
POL1_62_H11.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_62_H11_A002 5', mRNA sequence /clone=POL1_62_H11_A002 /clone_end=5' /gb=CF479967 /gi=34508836
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516

Domain Architecture

zf-CCCH PF00642 LOC_Os08g03310.6
DomainStartEndBit scoreE-value
zf-CCCH21223726.60.0001

Sequences