Gene model: LOC_Os08g06630.1

Species: Oryza sativa subsp. japonica Locus LOC_Os08g06630 Gene model LOC_Os08g06630.1 Description RNA polymerase sigma factor, putative, expressed Family Sigma70-like 3D structure (top 5) 1L9Z 1RP3 1SIG 1L0O 2A6H
	PDB entry: 1L9Z 1RP3 1SIG 1L0O 2A6H 1TTY 2P7V 1TLH 1KU3 1OR7 2Q1Z

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

893809 Score: 1

Arabidopsis thaliana

AT1G64860.1 Score: 1

Carica papaya

evm.TU.supercontig_3807.1 Score: 1

Populus trichocarpa

665539 Score: 1

Sorghum bicolor

4763513 Score: 1

Vitis vinifera

GSVIVP00013881001 Score: 1

Zea mays

GRMZM2G006736_P01 Score: 1
GRMZM2G006736_P02 Score: 1
GRMZM2G006736_P03 Score: 1
GRMZM2G098893_P01 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.25556)
• NCBI EST Profile Viewer (UniGene: Hv.13585)
• NCBI EST Profile Viewer (UniGene: Mtr.15977)
• NCBI EST Profile Viewer (UniGene: Os.3407)
• NCBI EST Profile Viewer (UniGene: Pba.603)
• NCBI EST Profile Viewer (UniGene: Pth.603)
• NCBI EST Profile Viewer (UniGene: Sbi.69)
• NCBI EST Profile Viewer (UniGene: Vvi.3158)

At.25556

Arabidopsis thaliana SIG2 mRNA for plastid RNA polymerase sigma-subunit, complete cds /cds=p(265,1773) /gb=AB004821

Hv.13585

HDP21E20w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP21E20, mRNA sequence /clone=HDP21E20 /gb=EX588748

Mtr.15977

EST1225753 MTY Medicago truncatula cDNA clone MTYAL66, mRNA sequence /clone=MTYAL66 /gb=DW016792

Os.3407

Oryza sativa Japonica Group mRNA for plastid RNA polymerase sigma factor, complete cds /cds=p(175,1734) /gb=AB005290

Pba.603

V010F07.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V010F07 3', mRNA sequence /clone=V010F07 /clone_end=3' /gb=DN491654

Pth.603

V010F07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU875731

Sbi.69

Sorghum bicolor mRNA for plastid RNA polymerase sigma factor /cds=p(222,1724) /gb=Y14276

Vvi.3158

CAB70003_IIIaR_D09 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70003_IIIaR_D09 3', mRNA sequence /clone=CAB70003_IIIaR_D09 /clone_end=3' /gb=CB980733

protein sequence
transcript sequence