Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os08g32085.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os08g32085
Gene model
LOC_Os08g32085.1
Description
expressed protein
Family
HB
3D structure (top 5)
2R5Y 1NK2 2E1O 2CUE 1JGG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

149329 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g32080.1 Score: 1
LOC_Os08g32085.1 Score: 1

Zea mays

GRMZM2G122076_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g32080.1 Score: 1
LOC_Os08g32085.1 Score: 1

Expression data

Expressed Sequence Tags

At.47815
Arabidopsis thaliana ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor (ATHB-1) mRNA, complete cds /cds=p(370,1188) /gb=NM_111013
Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Hv.30429
HVSMEf0018I10f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0018I10f, mRNA sequence /clone=HVSMEf0018I10f /gb=BF259252
Mtr.4475
EST647871 HOGA Medicago truncatula cDNA clone HOGA-33D17, mRNA sequence /clone=HOGA-33D17 /gb=CB895079
Os.52806
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence /gb=CT837895
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Os.57545
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence /gb=CT830627
Pth.17274
Populus trichocarpa clone WS0125_E07 unknown mRNA /cds=p(469,1413) /gb=EF147822

Domain Architecture

Homeobox PF00046 LOC_Os08g32085.1
DomainStartEndBit scoreE-value
Homeobox8614076.11.3e-19
HALZ14118577.45.3e-20

Sequences