Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os08g40430.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os08g40430
Gene model
LOC_Os08g40430.1
Description
mTERF domain containing protein, expressed
Family
mTERF

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490575 Score: 1

Arabidopsis thaliana

AT4G38160.1 Score: 1
AT4G38160.2 Score: 1

Carica papaya

evm.TU.supercontig_60.8 Score: 1

Micromonas pusilla CCMP1545

54140 Score: 1

Populus trichocarpa

199625 Score: 1

Sorghum bicolor

149411 Score: 1

Selaginella moellendorffii

83040 Score: 1

Vitis vinifera

GSVIVP00036310001 Score: 1

Zea mays

GRMZM2G113181_P01 Score: 1
GRMZM2G113181_P02 Score: 1

Expression data

Expressed Sequence Tags

At.20825
Arabidopsis thaliana PDE191 (PIGMENT DEFECTIVE 191) (PDE191) mRNA, complete cds /cds=p(70,1161) /gb=NM_202974
Hv.17567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165m08, mRNA sequence /gb=AK252641
Os.15707
Oryza sativa Japonica Group cDNA clone:001-039-E10, full insert sequence /cds=p(111,1112) /gb=AK061787
Pth.14604
WS0256.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_I12 3', mRNA sequence /clone=WS0256_I12 /clone_end=3' /gb=CV245118
Sbi.6027
POL1_63_F11.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_63_F11_A002 5', mRNA sequence /clone=POL1_63_F11_A002 /clone_end=5' /gb=CF480109 /gi=34508978
Vvi.22803
WIN094.C21_H20 Cab Sauv pericarp normalized (WIN09) Vitis vinifera cDNA clone WIN094_H20 3', mRNA sequence /clone=WIN094_H20 /clone_end=3' /gb=EC970075

Domain Architecture

mTERF PF02536 LOC_Os08g40430.1
DomainStartEndBit scoreE-value
mTERF13325114.63.3e-31

Sequences