Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os08g42600.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os08g42600
Gene model
LOC_Os08g42600.2
Description
retinoblastoma-related protein-like, putative, expressed
Family
RB
3D structure (top 5)
2R7G 2QDJ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478590 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.1 Score: 1
LOC_Os08g42600.2 Score: 1

Arabidopsis thaliana

AT3G12280.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.995

Carica papaya

evm.TU.supercontig_169.34 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.996

Chlamydomonas reinhardtii

187248 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.998

Coccomyxa sp. C-169

70385 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.997

Micromonas pusilla CCMP1545

48829 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.1 Score: 1
LOC_Os08g42600.2 Score: 0.996

Micromonas sp. RCC299

64476 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.997

Ostreococcus tauri

24582 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.998

Physcomitrella patens

10529 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.996

Populus trichocarpa

639804 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.995

Sorghum bicolor

4764709 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.1 Score: 1
LOC_Os08g42600.2 Score: 0.978

Selaginella moellendorffii

97707 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.997

Vitis vinifera

GSVIVP00032361001 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.2 Score: 1
LOC_Os08g42600.1 Score: 0.994

Zea mays

GRMZM2G033828_P02 Score: 1
GRMZM2G033828_P03 Score: 1
GRMZM2G137537_P01 Score: 1
GRMZM2G137537_P03 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42600.1 Score: 1
LOC_Os08g42600.2 Score: 1

Expression data

Expressed Sequence Tags

At.14958
Arabidopsis thaliana RBR1 (RETINOBLASTOMA-RELATED 1) (RBR1) mRNA, complete cds /cds=p(261,3302) /gb=NM_112064
Hv.30827
HVSMEc0001I06f2 Hordeum vulgare seedling shoot (etiolated unstressed) cDNA library HVSMEc (HVcDNA0003)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0014G07r, mRNA sequence /clone=HV__Ea0014G07r /gb=GH213654
Hv.5609
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83d11, mRNA sequence /gb=AK248360
Mtr.15037
AC0520 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615451
Os.58052
Oryza sativa Japonica Group cDNA, clone: J065187G05, full insert sequence /cds=p(181,3213) /gb=AK241627
Os.87698
Oryza sativa Japonica Group cDNA clone:J023138G19, full insert sequence /gb=AK121431
Pba.3797
F079P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI137072
Pba.4988
WS01125.BR_M14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_M14 5', mRNA sequence /clone=WS01125_M14 /clone_end=5' /gb=DT497201
Pth.3797
F079P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI137072
Pth.4988
WS01125.BR_M14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_M14 5', mRNA sequence /clone=WS01125_M14 /clone_end=5' /gb=DT497201
Ptp.9142
Populus tremula x Populus tremuloides retinoblastoma-related protein 1 (RB1) mRNA, complete cds /cds=p(224,3331) /gb=AF133675
Vvi.11678
WIN015.B21_N01 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN015_N01 3', mRNA sequence /clone=WIN015_N01 /clone_end=3' /gb=EC922161
Vvi.17405
S5B02463 Fruits 7-9 mm treated with GA3 (VvS5) Vitis vinifera cDNA clone S5B02463, mRNA sequence /clone=S5B02463 /gb=EE086681

Domain Architecture

RB_A PF01858 LOC_Os08g42600.2
DomainStartEndBit scoreE-value
RB_A4196193573.6e-104
RB_B7318612343.8e-67

Sequences