Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os08g43334.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os08g43334
Gene model
LOC_Os08g43334.1
Description
HSF-type DNA-binding domain containing protein, expressed
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

911518 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.1 Score: 1
LOC_Os09g35790.1 Score: 1

Carica papaya

evm.TU.supercontig_107.29 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.2 Score: 1
LOC_Os08g43334.1 Score: 0.994

Populus trichocarpa

548499 Score: 1

Vitis vinifera

GSVIVP00001119001 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.2 Score: 1
LOC_Os08g43334.1 Score: 0.994

Zea mays

GRMZM2G098696_P01 Score: 1
GRMZM2G098696_P02 Score: 0.967

Oryza sativa subsp. japonica

LOC_Os08g43334.1 Score: 1
LOC_Os08g43334.2 Score: 1

Expression data

Expressed Sequence Tags

Hv.15777
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178m14, mRNA sequence /gb=AK248436
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Os.11941
Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence /gb=AK106545
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483
Pba.10851
WS01226.BR_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I21 5', mRNA sequence /clone=WS01226_I21 /clone_end=5' /gb=DT472578
Pth.367
Populus trichocarpa clone WS0125_K14 unknown mRNA /cds=p(145,1251) /gb=EF147879
Sbi.1889
HS1_4_A05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_4_A05_A012 5', mRNA sequence /clone=HS1_4_A05_A012 /clone_end=5' /gb=CD204212 /gi=30933027

Domain Architecture

HSF_DNA-bind PF00447 LOC_Os08g43334.1
DomainStartEndBit scoreE-value
HSF_DNA-bind190400146.48.8e-41

Sequences