Gene model: LOC_Os08g43334.1

Species: Oryza sativa subsp. japonica Locus LOC_Os08g43334 Gene model LOC_Os08g43334.1 Description HSF-type DNA-binding domain containing protein, expressed Family HSF 3D structure (top 5) 1HKS 3HTS
	PDB entry: 1HKS 3HTS

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

911518 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.1 Score: 1
LOC_Os09g35790.1 Score: 1

Carica papaya

evm.TU.supercontig_107.29 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.2 Score: 1
LOC_Os08g43334.1 Score: 0.994

Populus trichocarpa

548499 Score: 1

Vitis vinifera

GSVIVP00001119001 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.2 Score: 1
LOC_Os08g43334.1 Score: 0.994

Zea mays

GRMZM2G098696_P01 Score: 1
GRMZM2G098696_P02 Score: 0.967

Oryza sativa subsp. japonica

LOC_Os08g43334.1 Score: 1
LOC_Os08g43334.2 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: Hv.15777)
• NCBI EST Profile Viewer (UniGene: Mtr.10591)
• NCBI EST Profile Viewer (UniGene: Os.11941)
• NCBI EST Profile Viewer (UniGene: Os.27716)
• NCBI EST Profile Viewer (UniGene: Os.50642)
• NCBI EST Profile Viewer (UniGene: Pba.10851)
• NCBI EST Profile Viewer (UniGene: Pth.367)
• NCBI EST Profile Viewer (UniGene: Sbi.1889)

Hv.15777

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178m14, mRNA sequence /gb=AK248436

Mtr.10591

EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287

Os.11941

Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence /gb=AK106545

Os.27716

Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958

Os.50642

Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483

Pba.10851

WS01226.BR_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I21 5', mRNA sequence /clone=WS01226_I21 /clone_end=5' /gb=DT472578

Pth.367

Populus trichocarpa clone WS0125_K14 unknown mRNA /cds=p(145,1251) /gb=EF147879

Sbi.1889

HS1_4_A05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_4_A05_A012 5', mRNA sequence /clone=HS1_4_A05_A012 /clone_end=5' /gb=CD204212 /gi=30933027

protein sequence
transcript sequence