Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os09g21180.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os09g21180
Gene model
LOC_Os09g21180.1
Description
homeobox associated leucine zipper, putative, expressed
Family
HB
3D structure (top 5)
2R5Y 2DMP 1B8I 1NK2 2E1O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4999874 Score: 1

Zea mays

GRMZM2G002915_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Hv.30429
HVSMEf0018I10f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0018I10f, mRNA sequence /clone=HVSMEf0018I10f /gb=BF259252
Os.52806
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence /gb=CT837895
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Sbi.8568
RHOH1_45_C07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_45_C07_A002 3', mRNA sequence /clone=RHOH1_45_C07_A002 /clone_end=3' /gb=CN130975 /gi=45960013

Domain Architecture

Homeobox PF00046 LOC_Os09g21180.1
DomainStartEndBit scoreE-value
Homeobox9515072.41.7e-18
HALZ15119540.85.5e-09

Sequences