Gene model: LOC_Os09g27060.1

Species: Oryza sativa subsp. japonica Locus LOC_Os09g27060 Gene model LOC_Os09g27060.1 Description SNF2 family N-terminal domain containing protein, expressed Family SNF2 3D structure (top 5) 1WP9 3DMQ 2FWR 1Z3I 1Z5Z
	PDB entry: 1WP9 3DMQ 2FWR 1Z3I 1Z5Z 1Z63 2DB3 2J0S 3EIQ 1HV8 2FZ4 2V1X 2OCA 2HJV 3FMP 2VA8 2P6N 2ZJ8 2I4I 1RIF 2EYQ 3EAQ 2P6R 1XTI 1S2M 1T5I 3FHT 1OYW 2Z0M 1FUK 1FUU 3B6E 2RB4 1GM5 1YKS 2JGN 2W00 2Z83 1C4O 2JLQ 2V6I 2VBC 2VL7 1HEI 2GXQ 3DKP 2OXC 3BER 2VSF 1VEC 1QDE 3FE2 3BOR 1T6N 3CRV 1CU1 3FMO 1WRB 2PL3 2FSF 1Q0U

• Gramene
• Rice Genome Annotation Project - MSU

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496925 Score: 1

Arabidopsis thaliana

AT5G66750.1 Score: 1

Cyanidioschyzon merolae

CMJ200C Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51230.1 Score: 1
LOC_Os03g51230.2 Score: 1
LOC_Os09g27060.1 Score: 1

Chlorella sp. NC64A

22847 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51230.1 Score: 1
LOC_Os03g51230.2 Score: 1
LOC_Os09g27060.1 Score: 1

Carica papaya

evm.TU.supercontig_55.90 Score: 1

Chlamydomonas reinhardtii

196757 Score: 1

Coccomyxa sp. C-169

81159 Score: 1

Micromonas pusilla CCMP1545

54122 Score: 1

Micromonas sp. RCC299

58978 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g51230.1 Score: 1
LOC_Os03g51230.2 Score: 1
LOC_Os09g27060.1 Score: 1

Ostreococcus lucimarinus

37662 Score: 1

Ostreococcus tauri

913 Score: 1

Physcomitrella patens

210776 Score: 1

Populus trichocarpa

250259 Score: 1

Sorghum bicolor

5048252 Score: 1

Selaginella moellendorffii

110395 Score: 1

Vitis vinifera

GSVIVP00024954001 Score: 1

Zea mays

GRMZM2G071025_P01 Score: 1

• MPSS data
• NCBI EST Profile Viewer (UniGene: At.28851)
• NCBI EST Profile Viewer (UniGene: Hv.2667)
• NCBI EST Profile Viewer (UniGene: Os.48755)
• NCBI EST Profile Viewer (UniGene: Os.6189)

At.28851

Arabidopsis thaliana CHR01/DDM1 (DECREASED DNA METHYLATION 1); helicase (CHR01/DDM1) mRNA, complete cds /cds=p(100,2394) /gb=NM_126073

Hv.2667

HDP19F18w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP19F18, mRNA sequence /clone=HDP19F18 /gb=EX596749

Os.48755

Oryza sativa Japonica Group OsDDM1b mRNA for chromatin remodeling factor DDM1b, complete cds /cds=p(279,2828) /gb=AB177379

Os.6189

Oryza sativa Japonica Group OsDDM1a mRNA for chromatin remodeling factor DDM1a, complete cds /cds=p(134,2671) /gb=AB177378

protein sequence
transcript sequence