Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os09g37910.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os09g37910
Gene model
LOC_Os09g37910.2
Description
HMG1/2, putative, expressed
Family
HMG
3D structure (top 5)
3F27 2EQZ 2CO9 1K99 2LEF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Coccomyxa sp. C-169

64336 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g37910.1 Score: 1.017
LOC_Os09g37910.2 Score: 1
LOC_Os09g37910.3 Score: 1

Expression data

Expressed Sequence Tags

Hv.8444
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf56i01, mRNA sequence /gb=AK249961
Os.57443
RECm1869 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI155F22, BI147L21, DEVEPH09, BI149D02, BI113E08, EI085K18 5', mRNA sequence /clone=BI155F22,_BI147L21,_DEVEPH09,_BI149D02,_BI113E08, _EI085K18 /cl

Domain Architecture

HMG_box PF00505 LOC_Os09g37910.2
DomainStartEndBit scoreE-value
HMG_box2897103.66.7e-28

Sequences