Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os10g28340.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os10g28340
Gene model
LOC_Os10g28340.1
Description
heat stress transcription factor, putative, expressed
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479794 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28340.1 Score: 1
LOC_Os10g28340.5 Score: 1

Arabidopsis thaliana

AT3G22830.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28340.1 Score: 1
LOC_Os10g28340.5 Score: 1

Micromonas sp. RCC299

108997 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28340.1 Score: 1
LOC_Os10g28340.5 Score: 1

Sorghum bicolor

5048842 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28340.1 Score: 1
LOC_Os10g28340.5 Score: 1

Zea mays

GRMZM2G010871_P01 Score: 1
GRMZM2G010871_P02 Score: 1
GRMZM2G010871_P03 Score: 1
GRMZM2G039925_P01 Score: 1
GRMZM2G039925_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g28340.1 Score: 1
LOC_Os10g28340.5 Score: 1

Expression data

Expressed Sequence Tags

At.32971
Arabidopsis thaliana HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor (HSF1) mRNA, complete cds /cds=p(1,1488) /gb=NM_117884
At.5364
Arabidopsis thaliana HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (HSF3) mRNA, complete cds /cds=p(117,1562) /gb=NM_180501
At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
At.6312
Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds /cds=p(162,1382) /gb=AY045974
Hv.14049
HDP12M14w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12M14, mRNA sequence /clone=HDP12M14 /gb=EX590241
Os.10942
Oryza sativa Japonica Group cDNA clone:J023077L03, full insert sequence /gb=AK072391
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.2292
Oryza sativa Japonica Group cDNA clone:002-137-C01, full insert sequence /cds=p(156,1022) /gb=AK109590
Os.40021
Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence /gb=AK066844
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pba.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Ppa.23110
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108327) mRNA, complete cds /cds=p(1,1224) /gb=XM_001778961
Ppa.23943
CAYY25595.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY25595 5', mRNA sequence /clone=CAYY25595 /clone_end=5' /gb=FC349157
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Vvi.24263
VVB181A04_414523 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB181A04 5, mRNA sequence /clone=VVB181A04 /clone_end=5' /gb=CD721308

Domain Architecture

HSF_DNA-bind PF00447 LOC_Os10g28340.1
DomainStartEndBit scoreE-value
HSF_DNA-bind412102637.2e-76

Sequences

protein sequence
transcript sequence