Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os10g30420.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os10g30420
Gene model
LOC_Os10g30420.1
Description
transcription factor Dp, putative, expressed
Family
E2F-DP
3D structure (top 5)
1CF7 2AZE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Micromonas sp. RCC299

98766 Score: 1

Ostreococcus lucimarinus

38105 Score: 1

Ostreococcus tauri

19752 Score: 1

Physcomitrella patens

121699 Score: 1

Sorghum bicolor

5029094 Score: 1

Expression data

Expressed Sequence Tags

At.4864
Arabidopsis thaliana DPB (DPB) mRNA, complete cds /cds=p(249,1406) /gb=NM_180426
At.4941
Arabidopsis thaliana mRNA for DP-like protein (dpa gene) /cds=p(174,1052) /gb=AJ294531
Cre.8970
Chlamydomonas reinhardtii DP1 mRNA, complete cds /cds=p(1,1941) /gb=DQ417491
Hv.27919
HDP09J01w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP09J01, mRNA sequence /clone=HDP09J01 /gb=EX583263
Hv.28149
HDP34F06w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP34F06, mRNA sequence /clone=HDP34F06 /gb=EX579301
Os.26417
Oryza sativa Japonica Group cDNA, clone: J075175O16, full insert sequence /gb=AK242229
Os.46788
Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence /gb=AK287809
Ppa.25838
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_121699) mRNA, complete cds /cds=p(1,849) /gb=XM_001759311
Ppa.9167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_194594) mRNA, complete cds /cds=p(70,654) /gb=XM_001777305
Ptp.117
Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds /cds=p(156,1217) /gb=AY307373
Sbi.6038
POL1_64_A11.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_64_A11_A002 5', mRNA sequence /clone=POL1_64_A11_A002 /clone_end=5' /gb=CF480221 /gi=34509090

Domain Architecture

E2F_TDP PF02319 LOC_Os10g30420.1
DomainStartEndBit scoreE-value
E2F_TDP92180139.51.1e-38
DP187345286.65.5e-83

Sequences