Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os10g42490.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os10g42490
Gene model
LOC_Os10g42490.2
Description
homeobox and START domains containing protein, putative, expressed
Family
HB
3D structure (top 5)
2R5Y 1NK2 2E1O 1PUF 1B8I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G46880.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42490.1 Score: 1
LOC_Os10g42490.2 Score: 1

Carica papaya

evm.TU.supercontig_90.5 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42490.1 Score: 1
LOC_Os10g42490.2 Score: 1

Populus trichocarpa

415411 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42490.1 Score: 1
LOC_Os10g42490.2 Score: 1

Vitis vinifera

GSVIVP00015683001 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42490.1 Score: 1
LOC_Os10g42490.2 Score: 1

Zea mays

GRMZM2G123140_P01 Score: 1
GRMZM2G123140_P03 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42490.1 Score: 1
LOC_Os10g42490.2 Score: 1

Expression data

Expressed Sequence Tags

At.50511
Arabidopsis thaliana HB-7 (homeobox-7); DNA binding / transcription factor (HB-7) mRNA, complete cds /cds=p(1,2463) /gb=NM_124059
Os.18549
Oryza sativa Japonica Group cDNA clone:J013087I01, full insert sequence /gb=AK071939

Domain Architecture

Homeobox PF00046 LOC_Os10g42490.2
DomainStartEndBit scoreE-value
Homeobox13519184.73.3e-22
START349581134.92.6e-37

Sequences