Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os11g05930.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os11g05930
Gene model
LOC_Os11g05930.1
Description
response regulator receiver domain containing protein, expressed
Family
Pseudo ARR-B
3D structure (top 5)
1K66 1W25 2JBA 3GRC 1P6Q
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G24470.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.901
LOC_Os11g05930.3 Score: 0.901

Chlamydomonas reinhardtii

166515 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.912
LOC_Os11g05930.3 Score: 0.912
LOC_Os11g05930.4 Score: 0.901

Micromonas pusilla CCMP1545

48139 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.912
LOC_Os11g05930.3 Score: 0.912
LOC_Os11g05930.4 Score: 0.901

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.915
LOC_Os11g05930.3 Score: 0.915
LOC_Os11g05930.4 Score: 0.905

Ostreococcus tauri

23022 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.916
LOC_Os11g05930.3 Score: 0.916
LOC_Os11g05930.4 Score: 0.905

Sorghum bicolor

5056377 Score: 1

Zea mays

GRMZM2G087293_P01 Score: 1
GRMZM2G087293_P02 Score: 1
GRMZM2G135446_P01 Score: 1
GRMZM2G135446_P02 Score: 1

Expression data

Expressed Sequence Tags

At.21641
Arabidopsis thaliana APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator (APRR5) mRNA, complete cds /cds=p(1,2004) /gb=NM_122355
Hv.30069
HV_CEa0013J20r2 Hordeum vulgare (Blumeria challenged) seedling green leaf cDNA library HV_CEa (HVcDNA0004)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0002J21f, mRNA sequence /clone=HV__Ea0002J21f /gb=GH207356
Mtr.19448
MTYCY38TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256565
Os.12795
Oryza sativa Japonica Group cDNA clone:J013001E13, full insert sequence /gb=AK120059
Os.58539
Oryza sativa Japonica Group cDNA clone:J023077E22, full insert sequence /gb=AK121136
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ppa.3166
Physcomitrella patens subsp. patens circadian clock protein PRR1 (PpPRR1) mRNA, partial cds /cds=p(1,1278) /gb=XM_001784561
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Sbi.10157
PIC1_53_A05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM325806
Sbi.4549
ANR1_21_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_21_D05_A002 3', mRNA sequence /clone=ANR1_21_D05_A002 /clone_end=3' /gb=CX610840 /gi=57809560
Vvi.23600
CA12EI204IIF_C02 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI204IIF_C02 5', mRNA sequence /clone=CA12EI204IIF_C02 /clone_end=5' /gb=CA815595

Domain Architecture

Response_reg PF00072 LOC_Os11g05930.1
DomainStartEndBit scoreE-value
Response_reg46160109.61e-29
CCT644688876.9e-23

Sequences