Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os11g05930.4

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os11g05930
Gene model
LOC_Os11g05930.4
Description
response regulator receiver domain containing protein, expressed
Family
Pseudo ARR-B
3D structure (top 5)
1K68 1K66 1W25 2JBA 2AYX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlamydomonas reinhardtii

166515 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.912
LOC_Os11g05930.3 Score: 0.912
LOC_Os11g05930.4 Score: 0.901

Micromonas pusilla CCMP1545

48139 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.912
LOC_Os11g05930.3 Score: 0.912
LOC_Os11g05930.4 Score: 0.901

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.915
LOC_Os11g05930.3 Score: 0.915
LOC_Os11g05930.4 Score: 0.905

Ostreococcus tauri

23022 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.916
LOC_Os11g05930.3 Score: 0.916
LOC_Os11g05930.4 Score: 0.905

Expression data

Expressed Sequence Tags

Hv.18813
HVSMEl0021L16f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0021L16f, mRNA sequence /clone=HVSMEl0021L16f /gb=BI950619
Hv.30069
HV_CEa0013J20r2 Hordeum vulgare (Blumeria challenged) seedling green leaf cDNA library HV_CEa (HVcDNA0004)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0002J21f, mRNA sequence /clone=HV__Ea0002J21f /gb=GH207356
Os.12795
Oryza sativa Japonica Group cDNA clone:J013001E13, full insert sequence /gb=AK120059
Sbi.4549
ANR1_21_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_21_D05_A002 3', mRNA sequence /clone=ANR1_21_D05_A002 /clone_end=3' /gb=CX610840 /gi=57809560

Domain Architecture

Response_reg PF00072 LOC_Os11g05930.4
DomainStartEndBit scoreE-value
Response_reg18421.91.5e-05
CCT565609876.9e-23

Sequences