Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os11g08080.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os11g08080
Gene model
LOC_Os11g08080.1
Description
SWIRM domain containing protein, expressed
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472410 Score: 1

Arabidopsis thaliana

AT1G21700.1 Score: 1

Micromonas sp. RCC299

104814 Score: 1
112657 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Populus trichocarpa

559267 Score: 1

Sorghum bicolor

4822356 Score: 1

Vitis vinifera

GSVIVP00015425001 Score: 1

Zea mays

GRMZM2G139760_P01 Score: 1
GRMZM2G139760_P02 Score: 0.97
GRMZM2G139760_P04 Score: 0.954

Expression data

Expressed Sequence Tags

Hv.16405
BES1824107f19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010F197 5-PRIME, mRNA sequence /clone=MPMGp2010F19107 /clone_end=5' /gb=CK124194
Hv.29353
HU02H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02H10 5-PRIME, mRNA sequence /clone=HU02H10 /clone_end=5' /gb=BQ465032
Os.72816
Oryza sativa Japonica Group cDNA clone:J013089J18, full insert sequence /cds=p(139,2493) /gb=AK066941
Os.9655
Oryza sativa (japonica cultivar-group) Os12g0176700 (Os12g0176700) mRNA, complete cds /cds=p(1,1809) /gb=NM_001072830
Sbi.11568
LG1_313_G01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW565021

Domain Architecture

SWIRM PF04433 LOC_Os11g08080.1
DomainStartEndBit scoreE-value
SWIRM18527586.41e-22
Myb_DNA-binding41546045.81.7e-10

Sequences