Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os11g38870.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os11g38870
Gene model
LOC_Os11g38870.2
Description
helix-loop-helix DNA-binding domain containing protein, expressed
Family
bHLH
3D structure (top 5)
1NKP 1AM9 1NLW 1HLO 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

5056731 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g38870.1 Score: 1
LOC_Os11g38870.2 Score: 0.91

Zea mays

GRMZM2G133675_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g38870.1 Score: 1
LOC_Os11g38870.2 Score: 0.922

Expression data

Expressed Sequence Tags

Hv.13906
HZ49O17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49O17 5-PRIME, mRNA sequence /clone=HZ49O17 /clone_end=5' /gb=CA024653
Os.27243
Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence /gb=AK068017

Domain Architecture

HLH PF00010 LOC_Os11g38870.2
DomainStartEndBit scoreE-value
HLH378713.10.0069

Sequences