Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os11g38900.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os11g38900
Gene model
LOC_Os11g38900.1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487281 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Populus trichocarpa

758229 Score: 1

Sorghum bicolor

4760357 Score: 1

Vitis vinifera

GSVIVP00033960001 Score: 1

Zea mays

GRMZM2G060478_P01 Score: 1

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Hv.11852
HVSMEi0002N21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0002N21f, mRNA sequence /clone=HVSMEi0002N21f /gb=BG365483
Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.35901
Oryza sativa Japonica Group cDNA clone:J013002H03, full insert sequence /gb=AK065227
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

AT_hook PF02178 LOC_Os11g38900.1
DomainStartEndBit scoreE-value
AT_hook12313513.10.15
AT_hook1671799.70.56
AT_hook20721911.70.25
AT_hook28229412.10.22
YDG_SRA356506324.42.2e-94
Pre-SET533633163.56.4e-46
SET635788190.25.8e-54

Sequences