Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os12g02030.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os12g02030
Gene model
LOC_Os12g02030.1
Description
BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed
Family
TRAF
3D structure (top 5)
2IF5 2Z8H 2YY9 2IHC 1R29
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

348708 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.969

Arabidopsis thaliana

AT3G56230.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.968

Carica papaya

evm.TU.supercontig_19.99 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.966

Chlamydomonas reinhardtii

166883 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g02070.1 Score: 1
LOC_Os12g02030.1 Score: 0.974

Physcomitrella patens

61156 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g02070.1 Score: 1
LOC_Os12g02030.1 Score: 0.961

Populus trichocarpa

424492 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.971

Sorghum bicolor

5005188 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.934

Selaginella moellendorffii

92030 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g02070.1 Score: 1
LOC_Os12g02030.1 Score: 0.965

Vitis vinifera

GSVIVP00029399001 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.965

Zea mays

GRMZM2G048192_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g02030.1 Score: 1
LOC_Os11g02070.1 Score: 0.934

Expression data

Expressed Sequence Tags

Os.79644
Oryza sativa Japonica Group cDNA clone:006-305-B10, full insert sequence /cds=p(105,932) /gb=AK061388
Os.8562
Oryza sativa Japonica Group cDNA clone:006-310-F06, full insert sequence /cds=p(114,941) /gb=AK061535

Domain Architecture

BTB PF00651 LOC_Os12g02030.1
DomainStartEndBit scoreE-value
BTB9320550.85.4e-12

Sequences

protein sequence
transcript sequence