Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os12g04410.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os12g04410
Gene model
LOC_Os12g04410.1
Description
BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed
Family
TRAF
3D structure (top 5)
2FO1 2RFA 2RFM 3B7B 2DVW
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4845977 Score: 1

Zea mays

GRMZM2G022606_P02 Score: 1
GRMZM2G172114_P01 Score: 1

Expression data

Expressed Sequence Tags

At.43967
Arabidopsis thaliana clone RAFL15-22-D12 (R20501) unknown protein (At2g41370) mRNA, complete cds /cds=p(238,1713) /gb=BT002986
At.47765
701497228 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA clone 701497228, mRNA sequence /clone=701497228 /gb=AI993707
At.53964
Arabidopsis thaliana BOP1 (BLADE ON PETIOLE 1); protein binding (BOP1) mRNA, complete cds /cds=p(1,1404) /gb=NM_115572
Hv.11508
HVSMEn0022F23f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022F23f, mRNA sequence /clone=HVSMEn0022F23f /gb=BI959919
Hv.22570
HQ02C24w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02C24 3-PRIME, mRNA sequence /clone=HQ02C24 /clone_end=3' /gb=CB883413
Mtr.9523
EST483989 GVN Medicago truncatula cDNA clone pGVN-69K3 5' end, mRNA sequence /clone=pGVN-69K3 /clone_end=5' /gb=BG582249
Os.49532
Oryza sativa (japonica cultivar-group) Os11g0141900 (Os11g0141900) mRNA, complete cds /cds=p(1,1485) /gb=NM_001072249
Os.59410
Oryza sativa Japonica Group cDNA clone:J023131A22, full insert sequence /gb=AK100894
Os.79637
Oryza sativa Japonica Group cDNA clone:006-201-B05, full insert sequence /gb=AK060933
Pba.7698
WS02526.BR_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_O10 5', mRNA sequence /clone=WS02526_O10 /clone_end=5' /gb=DT479766
Pth.14283
WS0199.B21_L09 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0199_L09 3', mRNA sequence /clone=WS0199_L09 /clone_end=3' /gb=CV233127
Pth.7698
WS02526.BR_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_O10 5', mRNA sequence /clone=WS02526_O10 /clone_end=5' /gb=DT479766
Vvi.24137
sT7aVVM002H06025 VVM Vitis vinifera cDNA clone VVM002H06025 5' similar to emb_CAO23333.1 unnamed protein product [Vitis vinifera]. Expect = 5e-66, mRNA sequence /clone=VVM002H06025 /clone_end=5' /gb=FC061894

Domain Architecture

BTB PF00651 LOC_Os12g04410.1
DomainStartEndBit scoreE-value
BTB1518424.50.00014
Ank30433716.40.12
Ank339371377.6e-08

Sequences