Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os12g06200.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os12g06200
Gene model
LOC_Os12g06200.1
Description
E2F family transcription factor protein, putative, expressed
Family
E2F-DP
3D structure (top 5)
2AZE 1CF7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_195.36 Score: 1

Coccomyxa sp. C-169

81755 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g06200.2 Score: 1
LOC_Os12g06200.1 Score: 0.913

Populus trichocarpa

418214 Score: 1
810382 Score: 1

Sorghum bicolor

5044546 Score: 1

Vitis vinifera

GSVIVP00037279001 Score: 1

Zea mays

GRMZM2G052515_P01 Score: 1

Expression data

Expressed Sequence Tags

Cre.11504
Chlamydomonas reinhardtii E2F1 mRNA, complete cds /cds=p(1,1314) /gb=DQ417492
Hv.22106
BES1824101h14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010H141 5-PRIME, mRNA sequence /clone=MPMGp2010H14101 /clone_end=5' /gb=CK122112
Mtr.11413
Medicago truncatula clone MTYFD_FE_FF_FG1G-O-10 unknown mRNA /cds=p(27,701) /gb=BT052455
Mtr.17583
AC0519 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615450
Mtr.22426
AC0518 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615449
Os.423
Oryza sativa Japonica Group cDNA clone:J013161I16, full insert sequence /cds=p(264,1691) /gb=AK068689
Os.424
Oryza sativa Japonica Group cDNA clone:001-024-E10, full insert sequence /gb=AK059233
Os.52509
Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence /cds=p(175,1134) /gb=AK067581
Pba.2433
WS0167.B21_C17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_C17 3', mRNA sequence /clone=WS0167_C17 /clone_end=3' /gb=CV227428
Ppa.14215
Physcomitrella patens mRNA for putative E2F transcription factor (e2f gene) /cds=p(241,1443) /gb=AJ428951
Ppa.3605
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_177212) mRNA, complete cds /cds=p(417,1619) /gb=XM_001756242
Pth.2433
WS0167.B21_C17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_C17 3', mRNA sequence /clone=WS0167_C17 /clone_end=3' /gb=CV227428

Domain Architecture

E2F_TDP PF02319 LOC_Os12g06200.1
DomainStartEndBit scoreE-value
E2F_TDP1301951361.2e-37

Sequences