Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: LOC_Os12g43950.2

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os12g43950
Gene model
LOC_Os12g43950.2
Description
homeobox domain containing protein, expressed
Family
HB
3D structure (top 5)
2DMN 1PUF 1DU6 1B72 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G34610.1 Score: 1
AT4G34610.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g47740.2 Score: 1
LOC_Os03g47740.3 Score: 1
LOC_Os12g43950.1 Score: 1
LOC_Os12g43950.2 Score: 1
LOC_Os12g43950.3 Score: 1
LOC_Os12g43950.4 Score: 1
LOC_Os03g47740.1 Score: 0.994

Sorghum bicolor

5059881 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g43950.1 Score: 1
LOC_Os12g43950.2 Score: 1
LOC_Os12g43950.3 Score: 1
LOC_Os12g43950.4 Score: 1

Vitis vinifera

GSVIVP00035919001 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g43950.1 Score: 1
LOC_Os12g43950.2 Score: 1
LOC_Os12g43950.3 Score: 1
LOC_Os12g43950.4 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.14305
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820985
At.16254
Arabidopsis thaliana BLH3 (BLH3) mRNA, complete cds /cds=p(682,2256) /gb=NM_001084358
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
At.74119
Arabidopsis thaliana clone 142443 mRNA, complete sequence /cds=p(28,1602) /gb=AY085278
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Hv.19575
HT04L13r HT Hordeum vulgare subsp. vulgare cDNA clone HT04L13 5-PRIME, mRNA sequence /clone=HT04L13 /clone_end=5' /gb=CA012176
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.6492
Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence /cds=p(789,2732) /gb=AK070465
Os.7976
Oryza sativa Japonica Group cDNA clone:J023057H24, full insert sequence /gb=AK070543
Ptp.5611
G095P48.5pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G095P48 5', mRNA sequence /clone=G095P48 /clone_end=5' /gb=DN493660
Sbi.14265
HS1_50_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_50_B01_A012 5', mRNA sequence /clone=HS1_50_B01_A012 /clone_end=5' /gb=CD210350 /gi=30945366
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 LOC_Os12g43950.2
DomainStartEndBit scoreE-value
POX198339267.62.9e-77
Homeobox3894476.90.0025

Sequences