Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD000751

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD000751
Description
Chr01_1126,4968,,,1,4968,
Family
SET
3D structure (top 5)
1V43 2FF7 1MV5 2PZE 2BBS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.37230
Arabidopsis thaliana ABC transporter family protein (AT1G54350) mRNA, complete cds /cds=p(36,2156) /gb=NM_104313
At.43382
Arabidopsis thaliana PHD finger protein-related / SET domain-containing protein (TX4) (AT4G27910) mRNA, complete cds /cds=p(1,3084) /gb=NM_118929
At.67333
Arabidopsis thaliana clone 120641 mRNA sequence /gb=DQ108709
Hv.4356
BJ467037 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags35l04 3', mRNA sequence /clone=bags35l04 /clone_end=3' /gb=BJ467037
Os.16133
Oryza sativa Japonica Group cDNA clone:J013022D13, full insert sequence /gb=AK065476
Os.26825
Oryza sativa Japonica Group cDNA clone:J013001D15, full insert sequence /gb=AK064992
Os.50353
Oryza sativa Japonica Group cDNA clone:J023020K07, full insert sequence /gb=AK120836
Pba.1904
WS0232.B21_L14 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_L14 3', mRNA sequence /clone=WS0232_L14 /clone_end=3' /gb=CV239535
Ppa.17872
Physcomitrella patens subsp. patens ATP-binding cassette transporter, subfamily D, member 2, group PMP protein PpABCD2 (ppabcd2) mRNA, partial cds /cds=p(1,1977) /gb=XM_001769252
Pth.12969
F033P65.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F033P65 3', mRNA sequence /clone=F033P65 /clone_end=3' /gb=CK090938
Pth.13471
WS0162.B21_F01 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_F01 3', mRNA sequence /clone=WS0162_F01 /clone_end=3' /gb=CV225758
Sbi.18943
POL1_8_F09.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_8_F09_A002 5', mRNA sequence /clone=POL1_8_F09_A002 /clone_end=5' /gb=CF482729 /gi=34511598
Vvi.19260
VVI069F03_593334 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI069F03 5, mRNA sequence /clone=VVI069F03 /clone_end=5' /gb=DT021747
Vvi.21312
WIN1115.C21_N03 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1115_N03 3', mRNA sequence /clone=WIN1115_N03 /clone_end=3' /gb=EC982390

Domain Architecture

PWWP PF00855 OsIBCD000751
DomainStartEndBit scoreE-value
PWWP1892687.70.0025
SET821951173.27e-49
ABC_membrane_29771271164.52.8e-46
SbmA_BacA9941322-72.19.8e-07
ABC_tran1391162794.92.6e-25

Sequences