Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD001007

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD001007
Description
Chr01_1469,2160,,,1,2160,
Family
C3H
3D structure (top 5)
1RDQ 2BDW 2PMI 3BRB 3FME
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.132
Arabidopsis thaliana putative shaggy kinase alpha (At5g26751) mRNA, complete cds /cds=p(244,1461) /gb=AY046024
At.20895
Arabidopsis thaliana ATSK12 (Arabidopsis thaliana SHAGGY-like kinase 12); protein kinase (ATSK12) mRNA, complete cds /cds=p(275,1504) /gb=NM_111458
At.24189
Arabidopsis thaliana shaggy-related protein kinase theta / ASK-theta (ASK8) (AT4G00720) mRNA, complete cds /cds=p(313,1731) /gb=NM_116297
At.24571
Arabidopsis thaliana shaggy-related protein kinase kappa / ASK-kappa (ASK10) (AT1G09840) mRNA, complete cds /cds=p(446,1711) /gb=NM_202072
At.24781
A.thaliana mRNA for shaggy-like kinase dzeta /cds=p(45,1283) /gb=X94938
At.28278
Arabidopsis thaliana protein kinase family protein (AT5G14640) mRNA, complete cds /cds=p(214,1446) /gb=NM_121468
At.36954
Arabidopsis thaliana shaggy-related protein kinase kappa, putative / ASK-kappa, putative (AT1G57870) mRNA, complete cds /cds=p(452,1714) /gb=NM_104580
Hv.13316
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf107d20, mRNA sequence /gb=AK251287
Mtr.14006
Medicago truncatula clone MTYFD_FE_FF_FG1G-L-7 unknown mRNA /cds=m(341,1495) /gb=BT052511
Mtr.17314
Medicago truncatula clone MTYF5_F6_F7_F81G-L-7 unknown mRNA /cds=p(170,1321) /gb=BT051791
Os.18526
Oryza sativa Japonica Group cDNA clone:J023042K05, full insert sequence /cds=p(367,1641) /gb=AK070062
Os.2068
Oryza sativa Japonica Group cDNA clone:001-124-D05, full insert sequence /cds=p(819,1490) /gb=AK063982
Os.6722
Oryza sativa Japonica Group cDNA clone:J023081B07, full insert sequence /gb=AK072390
Os.9955
Oryza sativa Japonica Group cDNA clone:J013091C23, full insert sequence /cds=p(1072,2298) /gb=AK099742
Ppa.10976
Physcomitrella patens shaggy-related protein kinase 1 (SK1) mRNA, complete cds /cds=p(580,1848) /gb=AY339065
Ppa.11246
Physcomitrella patens shaggy-related protein kinase 3 (SK3) mRNA, complete cds /cds=p(373,1644) /gb=AY339067
Ppa.11650
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_163779) mRNA, complete cds /cds=p(959,2230) /gb=XM_001763213
Ppa.12164
Physcomitrella patens shaggy-related protein kinase 4 (SK4) mRNA, complete cds /cds=p(7,1281) /gb=AY339068
Ppa.128
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_211896) mRNA, complete cds /cds=p(152,1426) /gb=XM_001765155
Pth.16457
Populus trichocarpa clone WS01119_I21 unknown mRNA /cds=p(192,1421) /gb=EF144894

Domain Architecture

Pkinase PF00069 OsIBCD001007
DomainStartEndBit scoreE-value
Pkinase72356323.44.2e-94
zf-U1449487391.7e-08
zf-CCCH51253829.99.2e-06

Sequences