Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD001039

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD001039
Description
Chr01_1518,3489,,,1,3489,
Family
C3H
3D structure (top 5)
2V6I 1YKS 1HEI 2JLQ 1CU1
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.36329
Arabidopsis thaliana zinc finger (CCCH type) helicase family protein (AT2G47680) mRNA, complete cds /cds=p(35,3082) /gb=NM_130336
At.43840
Arabidopsis thaliana EMB1644 (EMBRYO DEFECTIVE 1644) (EMB1644) mRNA, complete cds /cds=p(228,617) /gb=NM_122654
Hv.3996
HVSMEg0008F04f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0008F04f, mRNA sequence /clone=HVSMEg0008F04f /gb=AW983135
Hv.6919
AV836863 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves second leaf stage Hordeum vulgare subsp. vulgare cDNA clone basdi12, mRNA sequence /clone=basdi12 /gb=AV836863
Mtr.10820
EST668604 MTUS Medicago truncatula cDNA clone MTUS-1A10, mRNA sequence /clone=MTUS-1A10 /gb=CF067883
Os.197
CT858184 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCFA015J08, mRNA sequence /clone=OSIGCFA015J08 /gb=CT858184
Os.49825
Oryza sativa Japonica Group cDNA clone:J023078K23, full insert sequence /gb=AK100311
Os.90321
CI282476 Oryza sativa (japonica cultivar-group) supermix Oryza sativa (japonica cultivar-group) cDNA clone 083-M143R-C11 3', mRNA sequence /clone=083-M143R-C11 /clone_end=3' /gb=CI282476
Pba.8371
WS02526.B21_I04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_I04 3', mRNA sequence /clone=WS02526_I04 /clone_end=3' /gb=DT484822
Pth.17511
Populus trichocarpa clone WS0128_O12 /gb=EF148229
Pth.8371
WS0255.B21_D03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_D03 3', mRNA sequence /clone=WS0255_D03 /clone_end=3' /gb=CV244633
Vvi.8921
WIN0513.C21_C02 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0513_C02 3', mRNA sequence /clone=WIN0513_C02 /clone_end=3' /gb=EC936658
Vvi.9171
S1G03994 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G03994, mRNA sequence /clone=S1G03994 /gb=EE075965

Domain Architecture

LSM PF01423 OsIBCD001039
DomainStartEndBit scoreE-value
LSM67276.58.8e-20
Helicase_C58067134.24.7e-07
zf-CCCH879904276.9e-05
zf-CCCH90693224.50.0004

Sequences