Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD001324

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD001324
Description
Chr01_1941,435,,,1,435,
Family
HB
3D structure (top 5)
2DMN 2DMQ 1DU6 2ECB 1K61
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Sbi.19141
ANR1_20_E03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_20_E03_A002 3', mRNA sequence /clone=ANR1_20_E03_A002 /clone_end=3' /gb=CX610679 /gi=57809399
Vvi.16658
VV_PEd0017e09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241384
Vvi.20404
VV_PEd05f05.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242359

Domain Architecture

ELK PF03789 OsIBCD001324
DomainStartEndBit scoreE-value
ELK315235.71.6e-07
Homeobox5411330.0054

Sequences