Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD002203

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD002203
Description
Chr01_3523,2325,,,1,2325,
Family
Jumonji
3D structure (top 5)
1VRB 2YU1 3D8C 2W2I 2OX0
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.8831
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT5G63080) mRNA, complete cds /cds=p(124,1512) /gb=NM_125702
Hv.22671
AV835792 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves adult, heading stage Hordeum vulgare subsp. spontaneum cDNA clone bah20j14, mRNA sequence /clone=bah20j14 /gb=AV835792
Os.33852
Oryza sativa Japonica Group cDNA clone:J033067F23, full insert sequence /gb=AK073801
Os.45959
Oryza sativa Japonica Group cDNA clone:J023090D06, full insert sequence /cds=p(347,3064) /gb=AK121218

Domain Architecture

JmjC PF02373 OsIBCD002203
DomainStartEndBit scoreE-value
JmjC35045678.32.4e-20

Sequences