Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD002885

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD002885
Description
Chr01_4543,1071,,,1,1071,
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.24299
Arabidopsis thaliana AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (AtTLP7) mRNA, complete cds /cds=p(76,1215) /gb=NM_104210
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
Hv.1211
HWM000.F05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM000.F05, mRNA sequence /clone=HWM000.F05 /gb=BE420604
Hv.27670
RUS65E04w HF Hordeum vulgare subsp. vulgare cDNA clone HF11D17, mRNA sequence /clone=HF11D17 /gb=FD523604
Mtr.13388
META224TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474143
Os.10160
Oryza sativa (japonica cultivar-group) Os05g0514300 (Os05g0514300) mRNA, complete cds /cds=p(246,1364) /gb=NM_001062568
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.22785
Oryza sativa Japonica Group cDNA clone:J023048A08, full insert sequence /cds=p(114,1184) /gb=AK070401
Os.31726
Oryza sativa Japonica Group cDNA clone:002-118-B03, full insert sequence /cds=p(68,1174) /gb=AK106853
Os.80328
Oryza sativa (japonica cultivar-group) Os05g0560400 (Os05g0560400) mRNA, complete cds /cds=p(1,1059) /gb=NM_001062843
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Vvi.6639
WIN035.C21_E09 Cab Sauv seed normalized (WIN03) Vitis vinifera cDNA clone WIN035_E09 3', mRNA sequence /clone=WIN035_E09 /clone_end=3' /gb=EC928480

Domain Architecture

F-box PF00646 OsIBCD002885
DomainStartEndBit scoreE-value
F-box328814.60.39
Tub99350366.25.3e-107

Sequences