Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD003218

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD003218
Description
Chr01_5015,750,,,1,750,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.25607
Arabidopsis thaliana AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor (AT-HSFC1) mRNA, complete cds /cds=p(390,1382) /gb=NM_113363
Hv.16134
HV10O05r HV Hordeum vulgare subsp. vulgare cDNA clone HV10O05 5-PRIME, mRNA sequence /clone=HV10O05 /clone_end=5' /gb=CA019131
Hv.16382
BNEL24h11 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL24h11 5' similar to putative heat shock transcription factor, mRNA sequence /clone=BNEL24h11 /clone_end=5' /gb=CV057176
Hv.30886
HC04G06 HC Hordeum vulgare subsp. vulgare cDNA clone HC04G06 similar to NP_189095.1| (NM_113363) heat shock transcription factor HSF1, putative [Arabidopsis thaliana] gi|9294046|dbj|BAB02003.1| (AB020746) contains similarity to heat shock trans, mRNA ...
Os.11250
Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence /cds=p(72,968) /gb=AK106488
Os.35681
Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence /cds=p(153,905) /gb=AK066316
Os.40015
Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence /gb=AK069479
Vvi.12796
sT7aVVM015L11038 VVM Vitis vinifera cDNA clone VVM015L11038 5' similar to emb_CAN72162.1 hypothetical protein [Vitis vinifera]. Expect = 2e-115, mRNA sequence /clone=VVM015L11038 /clone_end=5' /gb=FC066410

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD003218
DomainStartEndBit scoreE-value
HSF_DNA-bind22196136.76.5e-38

Sequences