Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD003808

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD003808
Description
Chr01_5851,1224,,,1,1224,
Family
C3H

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.39718
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G20280) mRNA, complete cds /cds=p(1,1116) /gb=NM_127587
Hv.5360
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence /gb=AK250766
Os.32086
Oryza sativa Japonica Group cDNA clone:J033050C24, full insert sequence /gb=AK101559
Pba.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535
Ppa.11399
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_24014) mRNA, partial cds /cds=p(1,1035) /gb=XM_001754460
Ppa.8194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_4327) mRNA, partial cds /cds=p(1,1071) /gb=XM_001778100
Pth.13590
WS0168.B21_G13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_G13 3', mRNA sequence /clone=WS0168_G13 /clone_end=3' /gb=CV227854
Pth.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535
Ptp.11119
A056P09.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A056P09 3', mRNA sequence /clone=A056P09 /clone_end=3' /gb=CK088504
Sbi.2541
HS1_16_F07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_16_F07_A012 3', mRNA sequence /clone=HS1_16_F07_A012 /clone_end=3' /gb=CD212708 /gi=30950057

Domain Architecture

zf-CCCH PF00642 OsIBCD003808
DomainStartEndBit scoreE-value
zf-CCCH719622.20.0016

Sequences