Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD004305

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD004305
Description
Chr01_6597,3723,,,1,3723,
Family
HB
3D structure (top 5)
3C48 2R60 2BIS 2JJM 2QZS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.22681
Arabidopsis thaliana ATSPS1F (SUCROSE PHOSPHATE SYNTHASE 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (ATSPS1F) mRNA, complete cds /cds=p(158,3289) /gb=NM_122035
At.27493
Arabidopsis thaliana ATSPS4F (ATSPS4F) mRNA, complete cds /cds=p(166,3318) /gb=NM_001036532
At.28444
Arabidopsis thaliana ATSPS2F/SPS1 (SUCROSE PHOSPHATE SYNTHASE 1); sucrose-phosphate synthase (ATSPS2F/SPS1) mRNA, complete cds /cds=p(201,3344) /gb=NM_121149
At.42425
Arabidopsis thaliana At1g04920/F13M7_7 mRNA, complete cds /cds=p(109,3297) /gb=AY078949
Hv.10674
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf87e12, mRNA sequence /gb=AK250619
Hv.11589
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf138m10, mRNA sequence /gb=AK251897
Hv.20629
Hordeum vulgare sucrose-phosphate synthase mRNA, partial cds /cds=p(1,1818) /gb=AF261107
Mtr.10387
EST590334 KV2 Medicago truncatula cDNA clone pKV2-53A3, mRNA sequence /clone=pKV2-53A3 /gb=BM779758
Mtr.8089
NF031F12ST1F1000 Developing stem Medicago truncatula cDNA clone NF031F12ST 5', mRNA sequence /clone=NF031F12ST /clone_end=5' /gb=AW690288
Os.22727
Oryza sativa Japonica Group cDNA clone:J023150H16, full insert sequence /cds=p(16,3051) /gb=AK121486
Os.3454
Oryza sativa Japonica Group cDNA clone:J023120M11, full insert sequence /gb=AK121341
Os.60812
Oryza sativa (japonica cultivar-group) Os11g0236100 (Os11g0236100) mRNA, complete cds /cds=p(1,3045) /gb=NM_001074101
Os.81254
Oryza sativa Japonica Group cDNA clone:J033058F14, full insert sequence /gb=AK101676
Os.96392
Oryza sativa Japonica Group cDNA, clone: J090023G09, full insert sequence /gb=AK288339
Ppa.12306
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_210965) mRNA, complete cds /cds=p(454,3681) /gb=XM_001764174
Ppa.7559
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_216637) mRNA, complete cds /cds=p(413,3637) /gb=XM_001770900
Sbi.12260
GABR1_17_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_17_F12_A002 5', mRNA sequence /clone=GABR1_17_F12_A002 /clone_end=5' /gb=CX615040 /gi=57813827
Sbi.13523
RHOH1_45_B03.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_45_B03_A002 5', mRNA sequence /clone=RHOH1_45_B03_A002 /clone_end=5' /gb=CN131044 /gi=45960126
Sbi.5859
PI1_51_F11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596045
Vvi.733
Vitis vinifera clone BACCA01_001393 sucrose-phosphate synthase 1 mRNA, complete cds /cds=p(95,3226) /gb=AY899999

Domain Architecture

Glycos_transf_1 PF00534 OsIBCD004305
DomainStartEndBit scoreE-value
Glycos_transf_150769083.76e-22
S6PP8111048-571.8e-06
Homeobox1171122567.35.1e-17

Sequences